Accession
MI0002232
Description
Populus trichocarpa
ptc-MIR166o precursor miRNA
Literature search
6 open access papers mention ptc-MIR166o
(22 sentences)
(22 sentences)
Sequence
29673365
reads,
427235.0
reads per million, 9 experiments
aagggguguuuggAAUGAAGUUUGAUCCAAGAUCcuugucucucccguucauuuaguaauguuacugcuagguuucgcuauguauugaucaguguauacacagcagcuacgagcuaggccuuguguuucagauuuuagcuucaauauagagugagagugauagaguuugauucaagauccaucucaugugugcuagcuagcuuuuaaauuuuuaaucauaucccuacuuccuguuaauucuuagguuuuaucuugcaaguuauuauauuuaguaaacaucaugaacugaucUCGGACCAGGCUUCAUUCCUUacaccgaa
....(((((..(((((((((((((.(((.(((((............((((((........((..(((((..((..((((((......)).))))...))..)))))..))(((.((((...((((((..(((((((((((...((((...((((((..(((.((((...))))...)))..))))))))))...)))))......))))))..)).))))..)))))))((((........)))).......((((((((......)))).)))).....)))))).))))).))).)))))))))))))..)))))...
....(((((..(((((((((((((.(((.(((((............((((((........((..(((((..((..((((((......)).))))...))..)))))..))(((.((((...((((((..(((((((((((...((((...((((((..(((.((((...))))...)))..))))))))))...)))))......))))))..)).))))..)))))))((((........)))).......((((((((......)))).)))).....)))))).))))).))).)))))))))))))..)))))...
Structure
aagg uu A A cuugucucuccc uuaguaauguuacugcuagguuucgcuauguauugaucaguguauacacagcagcuac c ccu - uc ------ uca aga gu --a u
ggugu ggAAUGAAGUUUG UCC AGAUC guucau gag uagg ugug uu agauuu uagcu auau gugaga gau gagu
||||| ||||||||||||| ||| ||||| |||||| ||| |||| |||| || |||||| ||||| |||| |||||| ||| |||| u
ccaca CCUUACUUCGGAC AGG Ucuag caagua uuc aucc auac aa uuuaaa aucga ugug uacucu cua cuua
-aag UU C C -----------u -------cuacaaaugauuuauauuauugaacguucuauuuuggauucuuaauugucc - -cu u uu uuuucg ucg --- ac gaa g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
CM000349.2: 3705072-3705391 [+]
Database links
Mature ptc-miR166o-5p
| Accession | MIMAT0055593 |
| Description | Populus trichocarpa ptc-miR166o-5p mature miRNA |
| Sequence | 14 - AAUGAAGUUUGAUCCAAGAUC - 34 |
| Evidence |
experimental
unknown |
Mature ptc-miR166o-3p
| Accession | MIMAT0001938 |
| Description | Populus trichocarpa ptc-miR166o-3p mature miRNA |
| Sequence | 292 - UCGGACCAGGCUUCAUUCCUU - 312 |
| Evidence | not_experimental |
References
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