Stem-loop ptc-MIR164f

Accession

MI0002217

Description

Populus trichocarpa ptc-MIR164f precursor miRNA

Literature search

9 open access papers mention ptc-MIR164f
(39 sentences)

Sequence

704 reads, 12.0 reads per million, 9 experiments

ugagccaugcUGGAGAAGCAGGGCACAUGCUaaaucuaucagcuugaaagucugauaguuuugCAUGUGCUCUAUCUCUCCAGCUuggac
....(((.((((((((...(((((((((((.(((.(((((((((....)).))))))).))))))))))))))...)))))))).)))..

Structure

ugag   u        AGC           U   u       -  u 
    cca gcUGGAGA   AGGGCACAUGC aaa cuaucag cu g
    ||| ||||||||   ||||||||||| ||| ||||||| ||  
    ggu CGACCUCU   UCUCGUGUACg uuu gauaguc ga a
--ca   U        CUA           -   u       u  a 

Annotation confidence High

Genome context

CM000339.2: 8307292-8307381 [+]

Mature ptc-miR164f-5p

• Accession: MIMAT0001923
• Description: Populus trichocarpa ptc-miR164f-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACAUGCU - 31
• Evidence: not_experimental

Mature ptc-miR164f-3p

• Accession: MIMAT0060821
• Description: Populus trichocarpa ptc-miR164f-3p mature miRNA
• Sequence: 64 - CAUGUGCUCUAUCUCUCCAGCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203