Stem-loop ptc-MIR164f

Accession

MI0002217

Description

Populus trichocarpa ptc-MIR164f precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

8 open access papers mention ptc-MIR164f
(38 sentences)

Sequence

ugagccaugcUGGAGAAGCAGGGCACAUGCUaaaucuaucagcuugaaagucugauaguuuugcaugugcucuaucucuccagcuuggac
....(((.((((((((...(((((((((((.(((.(((((((((....)).))))))).))))))))))))))...)))))))).)))..

Structure

ugag   u        AGC           U   u       -  u 
    cca gcUGGAGA   AGGGCACAUGC aaa cuaucag cu g
    ||| ||||||||   ||||||||||| ||| ||||||| ||  
    ggu cgaccucu   ucucguguacg uuu gauaguc ga a
--ca   u        cua           -   u       u  a 

Annotation confidence Not enough data

Genome context

CM000339.2: 8307292-8307381 [+]

Mature ptc-miR164f

• Accession: MIMAT0001923
• Description: Populus trichocarpa ptc-miR164f mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACAUGCU - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203