Stem-loop ptc-MIR156i

Accession

MI0002192

Description

Populus trichocarpa ptc-MIR156i precursor miRNA

Literature search

10 open access papers mention ptc-MIR156i
(90 sentences)

Sequence

603648 reads, 10254.0 reads per million, 9 experiments

ugugauguugUUGACAGAAGAUAGAGAGCACagaugauguuuugcaguagacucuggaucucacuccuuuguGCUCUCUAUGCUUCUGCCAUCaccuuc
.((((((.....(.((((((((((((((((((((.((((...(.(((......))).)...)).)).)))))))))))))).)))))))))))))....

Structure

---u      uugUU A      -              u  -  uuu g   ua 
    gugaug     G CAGAAG AUAGAGAGCACaga ga ug   u cag  g
    ||||||     | |||||| |||||||||||||| || ||   | |||   
    caCUAC     C GUCUUC UAUCUCUCGuguuu cu ac   a guc  a
cuuc      ----- -      G              c  c  ucu g   uc 

Annotation confidence High

Genome context

CM000348.2: 4332062-4332160 [-]

Mature ptc-miR156i-5p

• Accession: MIMAT0001898
• Description: Populus trichocarpa ptc-miR156i-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR156i-3p

• Accession: MIMAT0055566
• Description: Populus trichocarpa ptc-miR156i-3p mature miRNA
• Sequence: 73 - GCUCUCUAUGCUUCUGCCAUC - 93
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203