Stem-loop ptc-MIR156i

Accession

MI0002192

Description

Populus trichocarpa ptc-MIR156i precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention ptc-MIR156i
(89 sentences)

Sequence

ugugauguugUUGACAGAAGAUAGAGAGCACagaugauguuuugcaguagacucuggaucucacuccuuugugcucucuaugcuucugccaucaccuuc
.((((((.....(.((((((((((((((((((((.((((...(.(((......))).)...)).)).)))))))))))))).)))))))))))))....

Structure

---u      uugUU A      -              u  -  uuu g   ua 
    gugaug     G CAGAAG AUAGAGAGCACaga ga ug   u cag  g
    ||||||     | |||||| |||||||||||||| || ||   | |||   
    cacuac     c gucuuc uaucucucguguuu cu ac   a guc  a
cuuc      ----- -      g              c  c  ucu g   uc 

Annotation confidence Not enough data

Genome context

CM000348.2: 4332062-4332160 [-]

Mature ptc-miR156i

• Accession: MIMAT0001898
• Description: Populus trichocarpa ptc-miR156i mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203