Stem-loop ptc-MIR166d

Accession

MI0002221

Description

Populus trichocarpa ptc-MIR166d precursor miRNA

Literature search

6 open access papers mention ptc-MIR166d
(22 sentences)

Sequence

41983789 reads, 592121.0 reads per million, 9 experiments

cgugaguugaggGGAAUGUUGGCUGGCUCGAAGcuuaagcaaagaguuuucucucaagaaacaacuguuaaggcuUCGGACCAGGCUUCAUUCCCCucaaccaau
..((.(((((((((((((..(.((((.(((((((((.((((....(((((.......)))))...)))).))))))))).)))).)..)))))))))))))))..

Structure

cg  a             UU G    C         a    aaga     cu 
  ug guugaggGGAAUG  G CUGG UCGAAGcuu agca    guuuu  c
  || |||||||||||||  | |||| ||||||||| ||||    |||||  u
  ac caacuCCCCUUAC  C GACC GGCUucgga uugu    caaag  c
ua  -             UU G    A         a    -caa     aa 

Annotation confidence High

Genome context

CM000341.2: 4841691-4841795 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR166d

Mature ptc-miR166d-5p

• Accession: MIMAT0055582
• Description: Populus trichocarpa ptc-miR166d-5p mature miRNA
• Sequence: 13 - GGAAUGUUGGCUGGCUCGAAG - 33
• Evidence: experimental ; unknown

Mature ptc-miR166d-3p

• Accession: MIMAT0001927
• Description: Populus trichocarpa ptc-miR166d-3p mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUUCCCC - 96
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604