Stem-loop ptc-MIR395a

Accession

MI0002315

Description

Populus trichocarpa ptc-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention ptc-MIR395a
(7 sentences)

Sequence

ggucacccugaguuccuccuagcuucuucaguacccguggaaagcuaaugcuacaauuaucuugagcugguaagacuggcaggugucagauguggauguguuaaagguaauauuauugauuauuuacggcgccauucaaguauuuguucuacuguuagaggauuuaaucaaguauaugugguauuacuccugauuugCUGAAGGGUUUGGAGGAACUCuaggugcu
((.((((..((((((((((.((((.((((((((.....(((..(.((((((((((..((.(((((...(((....(((((((....((((((((((((((((..(((((((.......)))))))..)))).))))))..)))))).....)))))))...)))...)))))))..)))))))))))))).....)))))))))))).))))))))))..))))))

Structure

  u    cu          u    u        cccgu   aa c          au  u     gcu   aaga       -gugu      --      -    aa       au 
gg cacc  gaguuccucc agcu cuucagua     gga  g uaaugcuaca  ua cuuga   ggu    cuggcag     cagaug  uggaug uguu  agguaau  u
|| ||||  |||||||||| |||| ||||||||     |||  | ||||||||||  || |||||   |||    |||||||     ||||||  |||||| ||||  |||||||  a
uc gugg  CUCAAGGAGG UUGG GAAGUCgu     ccu  c auuauggugu  au gaacu   uua    gauuguc     guuuau  acuuac gcgg  uuuauua  u
  -    au          U    -        uuagu   -- -          au  -     aau   -gga       aucuu      ga      c    ca       gu 

Annotation confidence Not enough data

Genome context

CM000338.2: 14667284-14667509 [+]

Mature ptc-miR395a

• Accession: MIMAT0002021
• Description: Populus trichocarpa ptc-miR395a mature miRNA
• Sequence: 198 - CUGAAGGGUUUGGAGGAACUC - 218
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604