Stem-loop ptc-MIR166g

Accession

MI0002224

Description

Populus trichocarpa ptc-MIR166g precursor miRNA

Literature search

7 open access papers mention ptc-MIR166g
(26 sentences)

Sequence

34821148 reads, 495251.0 reads per million, 9 experiments

acacaguugaggGGAAUGCUGUCUGGUUCGAGAccauucaccugaagcgcacgcauucaucuuuugagugaucUCGGACCAGGCUUCAUUCCCCccaacucaa
....(((((.((((((((..(((((((((((((.((((((..((((((....)).)))).....)))))).)))))))))))))..)))))))).)))))...

Structure

acac     a        CU             c      ---cc    -  g 
    aguug ggGGAAUG  GUCUGGUUCGAGA cauuca     ugaa gc c
    ||||| ||||||||  ||||||||||||| ||||||     |||| ||  
    ucaac CCCCUUAC  CGGACCAGGCUcu gugagu     acuu cg a
-aac     c        UU             a      uuucu    a  c 

Annotation confidence High

Genome context

CM000344.2: 10886852-10886954 [-]

Mature ptc-miR166g-5p

• Accession: MIMAT0055585
• Description: Populus trichocarpa ptc-miR166g-5p mature miRNA
• Sequence: 13 - GGAAUGCUGUCUGGUUCGAGA - 33
• Evidence: experimental ; unknown

Mature ptc-miR166g-3p

• Accession: MIMAT0001930
• Description: Populus trichocarpa ptc-miR166g-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604