Stem-loop ptc-MIR397b

Accession

MI0002333

Description

Populus trichocarpa ptc-MIR397b precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

2 open access papers mention ptc-MIR397b
(3 sentences)

Sequence

uaauuauacaCCAUUGAGUGCAGCGUUGAUGaaauucucuuguuagcuuacuuagcuauuuucucacgauggcguggaaucauuucaccagcgcugcauucaaccauguuuuuc
.......(((...(((((((((((((((.((((((........(((((.....)))))..(((.((((....)))))))..)))))).)))))))))))))))...))).....

Structure

uaauuau   CCA               A      ucucuuguuagcuuacuuagcuauu   u    a 
       aca   UUGAGUGCAGCGUUG UGaaau                         uuc cacg u
       |||   ||||||||||||||| ||||||                         ||| ||||  
       ugu   aacuuacgucgcgac acuuua                         aag gugc g
--cuuuu   acc               c      -----------------------cu   -    g 

Annotation confidence Not enough data

Genome context

CM000340.2: 2207873-2207986 [+]

Mature ptc-miR397b

• Accession: MIMAT0002039
• Description: Populus trichocarpa ptc-miR397b mature miRNA
• Sequence: 11 - CCAUUGAGUGCAGCGUUGAUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604