Stem-loop ptc-MIR166a

Accession

MI0002218

Description

Populus trichocarpa ptc-MIR166a precursor miRNA

Literature search

7 open access papers mention ptc-MIR166a
(33 sentences)

Sequence

27483025 reads, 388239.0 reads per million, 9 experiments

uuucuuuugaggGGAAUGUUGUCUGGCUCGAGGUcacuaaugggaucuaugauuuuaucucaauugauugauuuucuuuuaaauucuaguaaauugaauugagagauaucaugaucaacuuauauuuaaugaugUCGGACCAGGCUUCAUUCCCCccaauuguu
...(..(((.((((((((..((((((.((((.((((.(((...((((.(((((....(((((((...(((((((.((..........)).))))))))))))))...))))))))).........))).)))).)))).))))))..)))))))).)))..)..

Structure

uuu uu   a        UU      C    G    c   ------ugg    u     uuua       uga       u  uuua 
   c  uug ggGGAAUG  GUCUGG UCGA GUca uaa         gauc augau    ucucaau   uugauuu cu    a
   |  ||| ||||||||  |||||| |||| |||| |||         |||| |||||    |||||||   ||||||| ||     
   g  aac CCCCUUAC  CGGACC GGCU uagu auu         cuag uacua    agaguua   aguuaaa ga    a
-uu uu   c        UU      A    g    a   uauauucaa    -     -uag       ---       u  ucuu 

Annotation confidence High

Genome context

CM000337.2: 8837231-8837394 [+]

Mature ptc-miR166a-5p

• Accession: MIMAT0055579
• Description: Populus trichocarpa ptc-miR166a-5p mature miRNA
• Sequence: 13 - GGAAUGUUGUCUGGCUCGAGGU - 34
• Evidence: experimental ; unknown

Mature ptc-miR166a-3p

• Accession: MIMAT0001924
• Description: Populus trichocarpa ptc-miR166a-3p mature miRNA
• Sequence: 135 - UCGGACCAGGCUUCAUUCCCC - 155
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604