Stem-loop ptc-MIR319f

Accession

MI0002301

Description

Populus trichocarpa ptc-MIR319f precursor miRNA

Literature search

8 open access papers mention ptc-MIR319f
(30 sentences)

Sequence

2692493 reads, 46242.0 reads per million, 9 experiments

uaauggugggagAGAGCUUCCUUCAGCCCACUcauggauaggagaaagggguugaauuagcugccgacucauucauucaagcaccaguagaaaaaggggaauggauauucuuuugcuacugugauugugugaaugaugcgggagauaauuuuacauccccucuuuuucugugcUUGGACUGAAGGGAGCUCCuuccuucuau
..((((.(((((.(((((((((((((.(((..((((((.((((((..((((..((((((.((.(((..((((((((.(((.(((.(((((.(((((((.........))))))).)))))))).))).))))))))..))).)).)))))).....))))))))))))))))..))).))))))))))))).))))).))))

Structure

ua    u     A             C   CU      u      aa    ---uu      g  g   ac        u   g   c     a       gaa 
  augg gggag GAGCUUCCUUCAG CCA  caugga aggaga  gggg     gaauua cu ccg  ucauucau caa cac aguag aaaaggg   u
  |||| ||||| ||||||||||||| |||  |||||| ||||||  ||||     |||||| || |||  |||||||| ||| ||| ||||| |||||||   g
  uauc uccuu CUCGAGGGAAGUC GGU  gugucu uuuucu  cccc     uuuaau ga ggc  aguaagug guu gug ucauc uuuucuu   g
--    u     C             A   Uc      -      --    uacau      a  g   gu        u   a   -     g       aua 

Annotation confidence High

Genome context

CM000349.2: 8843265-8843466 [+]

Mature ptc-miR319f-5p

• Accession: MIMAT0055623
• Description: Populus trichocarpa ptc-miR319f-5p mature miRNA
• Sequence: 13 - AGAGCUUCCUUCAGCCCACU - 32
• Evidence: experimental ; unknown

Mature ptc-miR319f-3p

• Accession: MIMAT0002007
• Description: Populus trichocarpa ptc-miR319f-3p mature miRNA
• Sequence: 174 - UUGGACUGAAGGGAGCUCC - 192
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203