miRBase entry: ptc-MIR166h

Stem-loop ptc-MIR166h


Accession
MI0002225
Description
Populus trichocarpa ptc-MIR166h precursor miRNA

Literature search
6 open access papers mention ptc-MIR166h
(23 sentences)

Sequence

acacaguugaggggaaugcugucugauucgagaccauucacuuuaagcacacauucaucuuucgaaugaucUCGGACCAGGCUUCAUUCCCCccaacucaa
....(((((.((((((((..(((((.(((((((.(((((........................))))).))))))).)))))..)))))))).)))))...

Structure
acac     a        cu     a       c     acuuuaagcac 
    aguug ggggaaug  gucug uucgaga cauuc           a
    ||||| ||||||||  ||||| ||||||| |||||            
    ucaac CCCCUUAC  CGGAC AGGCUcu guaag           c
-aac     c        UU     C       a     cuuucuacuua 


Annotation confidence Not enough data
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Genome context
CM000346.2: 9569645-9569745 [+]

Database links

Mature ptc-miR166h

Accession MIMAT0001931
Description Populus trichocarpa ptc-miR166h mature miRNA
Sequence 72 - UCGGACCAGGCUUCAUUCCCC - 92
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604