Stem-loop ptc-MIR166h

Accession

MI0002225

Description

Populus trichocarpa ptc-MIR166h precursor miRNA

Literature search

7 open access papers mention ptc-MIR166h
(23 sentences)

Sequence

34824051 reads, 495298.0 reads per million, 9 experiments

acacaguugaggGGAAUGCUGUCUGAUUCGAGAccauucacuuuaagcacacauucaucuuucgaaugaucUCGGACCAGGCUUCAUUCCCCccaacucaa
....(((((.((((((((..(((((.(((((((.(((((........................))))).))))))).)))))..)))))))).)))))...

Structure

acac     a        CU     A       c     acuuuaagcac 
    aguug ggGGAAUG  GUCUG UUCGAGA cauuc           a
    ||||| ||||||||  ||||| ||||||| |||||            
    ucaac CCCCUUAC  CGGAC AGGCUcu guaag           c
-aac     c        UU     C       a     cuuucuacuua 

Annotation confidence High

Genome context

CM000346.2: 9569645-9569745 [+]

Mature ptc-miR166h-5p

• Accession: MIMAT0055586
• Description: Populus trichocarpa ptc-miR166h-5p mature miRNA
• Sequence: 13 - GGAAUGCUGUCUGAUUCGAGA - 33
• Evidence: experimental ; unknown

Mature ptc-miR166h-3p

• Accession: MIMAT0001931
• Description: Populus trichocarpa ptc-miR166h-3p mature miRNA
• Sequence: 72 - UCGGACCAGGCUUCAUUCCCC - 92
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604