Stem-loop ptc-MIR166b

Accession

MI0002219

Description

Populus trichocarpa ptc-MIR166b precursor miRNA

Literature search

7 open access papers mention ptc-MIR166b
(25 sentences)

Sequence

27277938 reads, 384733.0 reads per million, 9 experiments

uaacuguugaggGGAUUGCUGUCUGGUUCGAUGUcauucaugugaagcuuuaacauuaauguaguauugagugauuUCGGACCAGGCUUCAUUCCCCccaacuaua
.....((((.(((((.((..(((((((((((.((((((((......((.(((....))).)).....)))))))).)))))))))))..)).))))).))))....

Structure

uaacu    a     U  CU           U        ugugaa  u   a 
     guug ggGGA UG  GUCUGGUUCGA GUcauuca      gc uua c
     |||| ||||| ||  ||||||||||| ||||||||      || |||  
     caac CCCCU AC  CGGACCAGGCU uagugagu      ug aau a
-auau    c     U  UU           u        -uauga  u   u 

Annotation confidence High

Genome context

CM000338.2: 2744789-2744894 [+]

Mature ptc-miR166b-5p

• Accession: MIMAT0055580
• Description: Populus trichocarpa ptc-miR166b-5p mature miRNA
• Sequence: 13 - GGAUUGCUGUCUGGUUCGAUGU - 34
• Evidence: experimental ; unknown

Mature ptc-miR166b-3p

• Accession: MIMAT0001925
• Description: Populus trichocarpa ptc-miR166b-3p mature miRNA
• Sequence: 77 - UCGGACCAGGCUUCAUUCCCC - 97
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604