Stem-loop ptc-MIR393b

Accession

MI0002310

Description

Populus trichocarpa ptc-MIR393b precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

3 open access papers mention ptc-MIR393b
(6 sentences)

Sequence

agaggaggcaUCCAAAGGGAUCGCAUUGAUCccgagugucccuggccauaauuuuggAUCAUGCUAUCCCUUUGGAUUccuccu
..((((((.((((((((((((.((((.(((((.((((.............)))).))))))))).)))))))))))).))))))

Structure

ag      c            C    U     c    guccc 
  aggagg aUCCAAAGGGAU GCAU GAUCc gagu     u
  |||||| |||||||||||| |||| ||||| ||||     g
  uccucc UAGGUUUCCCUA CGUA CUAgg uuua     g
--      U            U    -     u    auacc 

Annotation confidence Not enough data

Genome context

CM000346.2: 17888037-17888120 [-]

Mature ptc-miR393b-5p

• Accession: MIMAT0002016
• Description: Populus trichocarpa ptc-miR393b-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR393b-3p

• Accession: MIMAT0022909
• Description: Populus trichocarpa ptc-miR393b-3p mature miRNA
• Sequence: 58 - AUCAUGCUAUCCCUUUGGAUU - 78
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034