Stem-loop ptc-MIR396b

Accession

MI0002326

Description

Populus trichocarpa ptc-MIR396b precursor miRNA

Literature search

7 open access papers mention ptc-MIR396b
(19 sentences)

Sequence

48708987 reads, 792754.0 reads per million, 9 experiments

cuuuguauucUUCCACAGCUUUCUUGAACUGcaccuauuagauuaauguugauguuguugugcgauaugccaugaccauaugacauuguauucauuuuugcugcgGUUCAAUAAAGCUGUGGGAAGauacaa
..(((((((.((((((((((((.((((((((((.(.....((.(((((((.((((.(((((((.....).)))))).)))))))))))...))......).)))))))))).)))))))))))).)))))))

Structure

cu       c            C          c -uauua  --u       g    u      - g 
  uuguauu UUCCACAGCUUU UUGAACUGca c      ga   uaauguu augu guugug c a
  ||||||| |||||||||||| |||||||||| |      ||   ||||||| |||| |||||| | u
  aacauaG AGGGUGUCGAAA AACUUGgcgu g      cu   guuacag uaua caguac g a
--       A            U          c uuuuua  uau       -    c      c u 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR396b-5p

• Accession: MIMAT0002032
• Description: Populus trichocarpa ptc-miR396b-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: not_experimental

Mature ptc-miR396b-3p

• Accession: MIMAT0055638
• Description: Populus trichocarpa ptc-miR396b-3p mature miRNA
• Sequence: 106 - GUUCAAUAAAGCUGUGGGAAG - 126
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604