Stem-loop ptc-MIR167a

Accession

MI0002235

Description

Populus trichocarpa ptc-MIR167a precursor miRNA

Literature search

6 open access papers mention ptc-MIR167a
(54 sentences)

Sequence

cacuagcaguUGAAGCUGCCAGCAUGAUCUAacuuccuugcuucuuuaucaaggauggauuuagaucauguggugguuucaccuguuga
...((((((.(((((((((((.((((((((((((((((((.........)))))).))..))))))))))))))))))))).)))))).

Structure

cac      u           G          --  -      cuu 
   uagcag UGAAGCUGCCA CAUGAUCUAa  cu uccuug   c
   |||||| ||||||||||| ||||||||||  || ||||||   u
   guuguc acuuugguggu guacuagauu  gg aggaac   u
--a      c           -          ua  u      uau 

Annotation confidence Not enough data

Genome context

CM000338.2: 3062198-3062286 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR167a

Mature ptc-miR167a

• Accession: MIMAT0001941
• Description: Populus trichocarpa ptc-miR167a mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604