Stem-loop ptc-MIR156j

Accession

MI0002193

Description

Populus trichocarpa ptc-MIR156j precursor miRNA

Literature search

10 open access papers mention ptc-MIR156j
(85 sentences)

Sequence

607029 reads, 10312.0 reads per million, 9 experiments

ggugauguugUUGACAGAAGAUAGAGAGCACagaugaugauaugcaauggacucugcaucccacuccuuuguGCUCUCUAUGCUUCUGUCAUCacuuuca
(((((......(((((((((((((((((((((((.((((..(((((........)))))..)).)).)))))))))))))).))))))))))))))....

Structure

----     uguugU         -              u  -  au     aug 
    gguga      UGACAGAAG AUAGAGAGCACaga ga ug  augca   g
    |||||      ||||||||| |||||||||||||| || ||  |||||    
    ucaCU      ACUGUCUUC UAUCUCUCGuguuu cu ac  uacgu   a
acuu     ------         G              c  c  cc     cuc 

Annotation confidence High

Genome context

CM000351.2: 4013699-4013798 [+]

Mature ptc-miR156j-5p

• Accession: MIMAT0001899
• Description: Populus trichocarpa ptc-miR156j-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR156j-3p

• Accession: MIMAT0055567
• Description: Populus trichocarpa ptc-miR156j-3p mature miRNA
• Sequence: 73 - GCUCUCUAUGCUUCUGUCAUC - 93
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203