Stem-loop ptc-MIR169l

Accession

MI0002262

Description

Populus trichocarpa ptc-MIR169l precursor miRNA

Literature search

9 open access papers mention ptc-MIR169l
(15 sentences)

Sequence

4091 reads, 68.0 reads per million, 9 experiments

ucuuguuugaUAGCCAAGGAUGACUUGCCUGcuacauacaagagaucauuaugcauaaauagaacgaaauauguacaugguauuaauuaaugcagugaaaacucuuguuugguugccaGGCAGUCUCCUUGGCUAAGCUGaca
...((((...((((((((((.((((.((((((..((.(((((((.((((..(((((.(((.((((..............)).)).))).)))))))))...))))))).))...).)))))))))))))))))))....))))

Structure

ucu    -uga          U    U     - -ua  u       --a    ua     a   a  -  gaaaua 
   uguu    UAGCCAAGGA GACU GCCUG c   ca acaagag   ucau  ugcau aau ga ac      u
   ||||    |||||||||| |||| ||||| |   || |||||||   ||||  ||||| ||| || ||       
   acaG    AUCGGUUCCU CUGA CGGac g   gu uguucuc   agug  acgua uua uu ug      g
---    UCGA          -    -     c uug  u       aaa    --     a   a  a  guacau 

Annotation confidence Medium

Genome context

CM000353.2: 7526169-7526311 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169l

Mature ptc-miR169l-5p

• Accession: MIMAT0001968
• Description: Populus trichocarpa ptc-miR169l-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

Mature ptc-miR169l-3p

• Accession: MIMAT0055607
• Description: Populus trichocarpa ptc-miR169l-3p mature miRNA
• Sequence: 119 - GGCAGUCUCCUUGGCUAAGCUG - 140
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604