Stem-loop ptc-MIR167c

Accession

MI0002237

Description

Populus trichocarpa ptc-MIR167c precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

6 open access papers mention ptc-MIR167c
(53 sentences)

Sequence

cacuagcaguUGAAGCUGCCAGCAUGAUCUAaauuaaccuccuucuuuaucaaggauggauuagaucaugugguaguuucaccugcuga
...((((((.(((((((((((.((((((((((.......(((.(((((...))))).)))))))))))))))))))))))).)))))).

Structure

cac      u           G          auuaacc   u     a 
   uagcag UGAAGCUGCCA CAUGAUCUAa       ucc ucuuu  
   |||||| ||||||||||| ||||||||||       ||| ||||| u
   gucguc acuuugauggu guacuagauu       agg aggaa  
--a      c           -          -------   u     c 

Annotation confidence Not enough data

Genome context

CM000341.2: 22458162-22458250 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR167c

Mature ptc-miR167c

• Accession: MIMAT0001943
• Description: Populus trichocarpa ptc-miR167c mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604