Accession
MI0002288
Description
Populus trichocarpa
ptc-MIR172b precursor miRNA
Gene family
MIPF0000035;
MIR172
Literature search
8 open access papers mention ptc-MIR172b
(34 sentences)
(34 sentences)
Sequence
uuguuugcggguGGAGCAUCAUCAAGAUUCACAugcaaaugcacggccggugauguuaagaguuaaaucuuucuuuguuucuguucaucugccaaaguucuuuggaagugAGAAUCUUGAUGAUGCUGCAUcggcaauaa
....((((.((((.((((((((((((((((((.(.((((.((..(((.(((((.....((((.((((......)))).))))..))))).)))...))..)))).).))))..)))))))))))))).)))).))))...
....((((.((((.((((((((((((((((((.(.((((.((..(((.(((((.....((((.((((......)))).))))..))))).)))...))..)))).).))))..)))))))))))))).)))).))))...
Structure
uugu g G -- A g -u -ac c uguua u uc
uugc gguG AGCAUCAUCAAGAU UCAC u caaa gc ggc gguga agag uaaa u
|||| |||| |||||||||||||| |||| | |||| || ||| ||||| |||| ||||
aacg cUAC UCGUAGUAGUUCUA Agug a guuu ug ccg cuacu ucuu guuu u
-aau g G AG a g cu aaa u ---ug u cu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM000345.2: 1730120-1730259 [-]
Database links
Mature ptc-miR172b-3p
| Accession | MIMAT0001994 |
| Description | Populus trichocarpa ptc-miR172b-3p mature miRNA |
| Sequence | 111 - AGAAUCUUGAUGAUGCUGCAU - 131 |
| Evidence |
experimental
miRNAseq [3] |
Mature ptc-miR172b-5p
| Accession | MIMAT0022904 |
| Description | Populus trichocarpa ptc-miR172b-5p mature miRNA |
| Sequence | 13 - GGAGCAUCAUCAAGAUUCACA - 33 |
| Evidence |
experimental
miRNAseq [3] |
References
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