miRBase entry: ptc-MIR395h

Stem-loop ptc-MIR395h


Accession
MI0002322
Description
Populus trichocarpa ptc-MIR395h precursor miRNA

Literature search
5 open access papers mention ptc-MIR395h
(7 sentences)

Sequence

guguccccuagaguuccucugagcacuucauuggggaucuuccaucgaccugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.((((((((((.((......)).)))).........)))))).))))))))))))))))))))..)).).))

Structure
g  u c  ua                    u      ---------    c  uc 
 ug c cc  gaguuccucugagcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||||||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuu         agaa gu  a
-  u u  uc                    C      acuauuaug    a  cc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR395h

Accession MIMAT0002028
Description Populus trichocarpa ptc-miR395h mature miRNA
Sequence 73 - CUGAAGUGUUUGGGGGAACUC - 93
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604