Stem-loop ptc-MIR156b

Accession

MI0002185

Description

Populus trichocarpa ptc-MIR156b precursor miRNA

Literature search

9 open access papers mention ptc-MIR156b
(80 sentences)

Sequence

28859 reads, 469.0 reads per million, 9 experiments

guaagggaggUGACAGAAGAGAGUGAGCACAcaggguacuuucuugcaugacauccaugcuugaaacuuugcguGCUCACUCUCUAUCUGUCACCccacca
.....((.((((((((((((((((((((((.((((((...(((..(((((.....)))))..))))))))).))))))))))))).)))))))))))....

Structure

guaag  a         -             A      acu   uu     a 
     gg ggUGACAGA AGAGAGUGAGCAC cagggu   uuc  gcaug c
     || ||||||||| ||||||||||||| ||||||   |||  ||||| a
     cc CCACUGUCU UCUCUCACUCGug guuuca   aag  cguac u
-acca  -         A             c      ---   uu     c 

Annotation confidence High

Genome context

CM000342.2: 22869899-22869999 [-]

Mature ptc-miR156b-5p

• Accession: MIMAT0001891
• Description: Populus trichocarpa ptc-miR156b-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCACA - 31
• Evidence: not_experimental

Mature ptc-miR156b-3p

• Accession: MIMAT0060817
• Description: Populus trichocarpa ptc-miR156b-3p mature miRNA
• Sequence: 75 - GCUCACUCUCUAUCUGUCACC - 95
• Evidence: experimental ; Illumina [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604