Stem-loop ptc-MIR396f

Accession

MI0002330

Description

Populus trichocarpa ptc-MIR396f precursor miRNA

Literature search

6 open access papers mention ptc-MIR396f
(13 sentences)

Sequence

cuuggugauuUUCCACGGCUUUCUUGAACUGuauauauuaucaauggcuuuuuacaagacuggaagaugguuuccauggagaagaauugucacaaaaacaguucaagaaagcccugaaaaauuauuu
...(((((((((.((.((((((((((((((((.........((((..((((((.((....((((((....)))))))))))))).))))........)))))))))))))))).)).))))))))).

Structure

cuu         C  C                auauauuau    gg      a  agac      a 
   ggugauuUU CA GGCUUUCUUGAACUGu         caau  cuuuuu ca    uggaag u
   ||||||||| || ||||||||||||||||         ||||  |||||| ||    ||||||  
   uuauuaaaa gu ccgaaagaacuugaca         guua  gaagag gu    accuuu g
--u         a  c                -aaaacacu    -a      -  ----      g 

Annotation confidence Not enough data

Genome context

CM000342.2: 25199401-25199527 [-]

Mature ptc-miR396f

• Accession: MIMAT0002036
• Description: Populus trichocarpa ptc-miR396f mature miRNA
• Sequence: 11 - UUCCACGGCUUUCUUGAACUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604