Stem-loop ptc-MIR169h

Accession

MI0002258

Description

Populus trichocarpa ptc-MIR169h precursor miRNA

Literature search

9 open access papers mention ptc-MIR169h
(13 sentences)

Sequence

3020 reads, 51.0 reads per million, 9 experiments

gaguguaauuCAGCCAAGGAUGACUUGCCGGcagcacgggaucucagagcuuaauaacuagaagaucaaggcugucauuacuuuuccggccGGCAAGUUGCCCUUGGCUACauuguac
..(((((((..((((((((.(((((((((((((((.(..(((((...((........))...)))))..))))...............)))))))))))).))))))))..)))))))

Structure

ga       uC        A            ---------------   a gg     cag  cuu 
  guguaau  AGCCAAGG UGACUUGCCGGc               agc c  gaucu   ag   a
  |||||||  |||||||| ||||||||||||               ||| |  |||||   ||    
  cauguua  UCGGUUCC GUUGAACGGccg               ucg g  cuaga   uc   a
--       CA        C            gccuuuucauuacug   - aa     aga  aau 

Annotation confidence Medium

Genome context

CM000342.2: 26618429-26618546 [+]

Mature ptc-miR169h-5p

• Accession: MIMAT0001964
• Description: Populus trichocarpa ptc-miR169h-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

Mature ptc-miR169h-3p

• Accession: MIMAT0055603
• Description: Populus trichocarpa ptc-miR169h-3p mature miRNA
• Sequence: 92 - GGCAAGUUGCCCUUGGCUAC - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604