Stem-loop ptc-MIR172g

Accession

MI0002293

Description

Populus trichocarpa ptc-MIR172g precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

8 open access papers mention ptc-MIR172g
(33 sentences)

Sequence

cuguuugccuauGGAGCAUCAUCAAGAUUCACAagcuuuauuagggcuaguguguggugaugaugguggcuuuugguggucccuuuuuuucaauccaauagcccuuugaauugGGAAUCUUGAUGAUGCUGCAGcggcaauaa
....(((((..((.((((((((((((((((.(((..((((..(((((((.((.((...((.((.((.((((......)))))).)).))...)).)).))))))).))))))).)))))))))))))))).))..)))))...

Structure

cugu     ua  G                A   gc    uu       g  u  ggu  u  u  u    uu 
    uugcc  uG AGCAUCAUCAAGAUUC CAa  uuua  agggcua ug gu   ga ga gg ggcu  u
    |||||  || |||||||||||||||| |||  ||||  ||||||| || ||   || || || ||||   
    aacgg  AC UCGUAGUAGUUCUAAG guu  aagu  ucccgau ac ua   uu uu cc cugg  g
-aau     cG  G                G   --    -u       a  c  acu  u  u  -    ug 

Annotation confidence Not enough data

Genome context

CM000346.2: 18369999-18370141 [-]

Mature ptc-miR172g-3p

• Accession: MIMAT0001999
• Description: Populus trichocarpa ptc-miR172g-3p mature miRNA
• Sequence: 114 - GGAAUCUUGAUGAUGCUGCAG - 134
• Evidence: experimental ; cloned [1], miRNAseq [4]

Mature ptc-miR172g-5p

• Accession: MIMAT0022905
• Description: Populus trichocarpa ptc-miR172g-5p mature miRNA
• Sequence: 13 - GGAGCAUCAUCAAGAUUCACA - 33
• Evidence: experimental ; miRNAseq [4]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


4. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034