miRBase entry: ptc-MIR160e

Stem-loop ptc-MIR160e


Accession
MI0002205
Description
Populus trichocarpa ptc-MIR160e precursor miRNA

Literature search
6 open access papers mention ptc-MIR160e
(22 sentences)

Sequence

aagaauggccUGCCUGGCUCCCUGAAUGCCAucuaggaagcuugucaaagaguguuggcaaccuuucuauuugGCAUGAGGGGAGUCGAGCAGGccaauu
.....((((((((.(((((((((..((((((..(((((((.(((((((......))))))).)))))))..))))))..))))))))).))))))))...

Structure
aagaa        C         GA      uc       c       ag 
     uggccUGC UGGCUCCCU  AUGCCA  uaggaag uugucaa  a
     |||||||| |||||||||  ||||||  ||||||| |||||||   
     accGGACG GCUGAGGGG  UACGgu  aucuuuc aacgguu  g
--uua        A         AG      uu       c       gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000342.2: 167623-167722 [+]

Database links

Mature ptc-miR160e-5p

Accession MIMAT0001911
Description Populus trichocarpa ptc-miR160e-5p mature miRNA
Sequence 11 - UGCCUGGCUCCCUGAAUGCCA - 31
Evidence experimental
miRNAseq [3]

Mature ptc-miR160e-3p

Accession MIMAT0022892
Description Populus trichocarpa ptc-miR160e-3p mature miRNA
Sequence 74 - GCAUGAGGGGAGUCGAGCAGG - 94
Evidence experimental
miRNAseq [3]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203

  3. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034