Stem-loop ptc-MIR156h

Accession

MI0002191

Description

Populus trichocarpa ptc-MIR156h precursor miRNA

Literature search

8 open access papers mention ptc-MIR156h
(76 sentences)

Sequence

1360651 reads, 23137.0 reads per million, 9 experiments

ggugaugcugUUGACAGAAGAUAGAGAGCACUGacgaugaaaugcauggagcuuaauugcaucucacuccuuuguGCUCUCUAGUCUUCUGUCAUCaccuuca
(((((......((((((((((((((((((((.((.(((((.(((((...........))))).))).)).)).))))))))).))))))))))))))))....

Structure

----     ugcugU           -         U  c  -   a     ugga 
    gguga      UGACAGAAGAU AGAGAGCAC Ga ga uga augca    g
    |||||      ||||||||||| ||||||||| || || ||| |||||    c
    ccaCU      ACUGUCUUCUG UCUCUCGug uu cu acu uacgu    u
acuu     ------           A         u  c  c   c     uaau 

Annotation confidence High

Genome context

CM000340.2: 7938832-7938934 [-]

Mature ptc-miR156h-5p

• Accession: MIMAT0001897
• Description: Populus trichocarpa ptc-miR156h-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCACUG - 33
• Evidence: experimental ; cloned [1]

Mature ptc-miR156h-3p

• Accession: MIMAT0055565
• Description: Populus trichocarpa ptc-miR156h-3p mature miRNA
• Sequence: 76 - GCUCUCUAGUCUUCUGUCAUC - 96
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203