Stem-loop ptc-MIR390d

Accession

MI0002308

Description

Populus trichocarpa ptc-MIR390d precursor miRNA

Literature search

4 open access papers mention ptc-MIR390d
(13 sentences)

Sequence

agaaucuguuAAGCUCAGGAGGGAUAGCGCCcuaaggauaaccaugggcucuuuuuauuugguuuuugacuaucaguggCGCUAUCCAUCCUGAGUUUUAcugguu
..((((.((.((((((((((.((((((((((((...((((..((.(((((..........))))).))..)))))).)))))))))).)))))))))).)).))))

Structure

ag    u  u          G          -  aag    ac  u     cuuu 
  aauc gu AAGCUCAGGA GGAUAGCGCC cu   gaua  ca gggcu    u
  |||| || |||||||||| |||||||||| ||   ||||  || |||||     
  uugg cA UUUGAGUCCU CCUAUCGCgg ga   cuau  gu uuugg    u
--    u  U          A          u  ---    ca  u     uuua 

Annotation confidence Not enough data

Genome context

CM000352.2: 12564435-12564540 [+]

Mature ptc-miR390d-5p

• Accession: MIMAT0002014
• Description: Populus trichocarpa ptc-miR390d-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR390d-3p

• Accession: MIMAT0022907
• Description: Populus trichocarpa ptc-miR390d-3p mature miRNA
• Sequence: 80 - CGCUAUCCAUCCUGAGUUUUA - 100
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034