Stem-loop ptc-MIR390c

Accession

MI0002307

Description

Populus trichocarpa ptc-MIR390c precursor miRNA

Literature search

6 open access papers mention ptc-MIR390c
(23 sentences)

Sequence

40883 reads, 699.0 reads per million, 9 experiments

aggaucuguuAAGCUCAGGAGGGAUAGCGCCaugagcugaugauaaguugauguuugauggguuaaucucaacauaaucaaucuagucauuaguggCGCUAUCUAUCCUGAGUUCUauagguu
..(((((((..(((((((((.((((((((((....(((((((((.(((((((...((.((((.....)))).))..))))).)).))))))))))))))))))).)))))))))..)))))))

Structure

ag       uA         G          auga         a  -     guu  a    u 
  gaucugu  AGCUCAGGA GGAUAGCGCC    gcugaugau ag uugau   ug uggg u
  |||||||  ||||||||| ||||||||||    ||||||||| || |||||   || |||| a
  uuggaua  UUGAGUCCU UCUAUCGCgg    ugauuacug uc aacua   ac acuc a
--       UC         A          ----         a  u     -au  a    u 

Annotation confidence High

Genome context

CM000345.2: 7516332-7516454 [+]

Mature ptc-miR390c-5p

• Accession: MIMAT0002013
• Description: Populus trichocarpa ptc-miR390c-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: not_experimental

Mature ptc-miR390c-3p

• Accession: MIMAT0055627
• Description: Populus trichocarpa ptc-miR390c-3p mature miRNA
• Sequence: 97 - CGCUAUCUAUCCUGAGUUCU - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604