miRBase entry: ptc-MIR395g

Stem-loop ptc-MIR395g


Accession
MI0002321
Description
Populus trichocarpa ptc-MIR395g precursor miRNA

Literature search
5 open access papers mention ptc-MIR395g
(7 sentences)

Sequence

guguccccuagaguuccucugagcacuucauuggggaucuuccaucgaccugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.((((((((((.((......)).)))).........)))))).))))))))))))))))))))..)).).))

Structure
g  u c  ua                    u      ---------    c  uc 
 ug c cc  gaguuccucugagcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||||||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuu         agaa gu  a
-  u u  uc                    C      acuauuaug    a  cc 


Annotation confidence Not enough data
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Genome context
CM000352.2: 13793446-13793547 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR395g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR395g

Accession MIMAT0002027
Description Populus trichocarpa ptc-miR395g mature miRNA
Sequence 73 - CUGAAGUGUUUGGGGGAACUC - 93
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604