Stem-loop ptc-MIR171f

Accession

MI0002282

Description

Populus trichocarpa ptc-MIR171f precursor miRNA

Literature search

6 open access papers mention ptc-MIR171f
(11 sentences)

Sequence

2284 reads, 37.0 reads per million, 9 experiments

gugucauugcgaUGUUGGCCCGGUUCACUCAGAgaaaagacaccauuuuuuuucaagaagaucaucaaagcuugaaagaauaaugguggucggucgucucUGAUUGAGCCGUGCCAAUAUCUuagugcuc
..(.(((((.(((((((((.(((((((.(((((((...(((((((((((((((((((.............)))))))))).)))))).))).....))))))).))))))).))))))))).))))))..

Structure

gu u     c         C       C       --aaa   -      -          aagau 
  g cauug gaUGUUGGC CGGUUCA UCAGAga     gac accauu uuuuuucaag     c
  | ||||| ||||||||| ||||||| |||||||     ||| |||||| ||||||||||     a
  c gugau CUAUAACCG GCCGAGU AGUcucu     cug ugguaa aagaaaguuc     u
cu -     U         U       U       gcugg   g      u          gaaac 

Annotation confidence High

Genome context

CM000338.2: 908813-908942 [+]

Mature ptc-miR171f-5p

• Accession: MIMAT0055614
• Description: Populus trichocarpa ptc-miR171f-5p mature miRNA
• Sequence: 13 - UGUUGGCCCGGUUCACUCAGA - 33
• Evidence: experimental ; unknown

Mature ptc-miR171f-3p

• Accession: MIMAT0001988
• Description: Populus trichocarpa ptc-miR171f-3p mature miRNA
• Sequence: 101 - UGAUUGAGCCGUGCCAAUAUCU - 122
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203