Stem-loop ptc-MIR160d

Accession

MI0002204

Description

Populus trichocarpa ptc-MIR160d precursor miRNA

Literature search

6 open access papers mention ptc-MIR160d
(22 sentences)

Sequence

4139 reads, 70.0 reads per million, 9 experiments

aaauggguuaUGCCUGGCUCCCUGUAUGCCAcagcaaagaccaaucucuucugucuuagauuggcugcugccggugGCGUGCGAGGAGCCAAGCAUAcucucu
....((((.((((.(((((((.((((((((((.(((.((.(((((((..........)))))))))..)))..)))))))))).))))))).))))))))...

Structure

aaau    u    C       C          -a   -a  a       cuuc 
    gggu aUGC UGGCUCC UGUAUGCCAc  gca  ag ccaaucu    u
    |||| |||| ||||||| ||||||||||  |||  || |||||||     
    cucA UACG ACCGAGG GCGUGCGgug  cgu  uc gguuaga    g
-ucu    -    A       A          gc   cg  -       uucu 

Annotation confidence High

Genome context

CM000347.2: 17793833-17793935 [-]

Mature ptc-miR160d-5p

• Accession: MIMAT0001910
• Description: Populus trichocarpa ptc-miR160d-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR160d-3p

• Accession: MIMAT0055571
• Description: Populus trichocarpa ptc-miR160d-3p mature miRNA
• Sequence: 77 - GCGUGCGAGGAGCCAAGCAUA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203