Stem-loop ptc-MIR171e

Accession

MI0002281

Description

Populus trichocarpa ptc-MIR171e precursor miRNA

Literature search

6 open access papers mention ptc-MIR171e
(11 sentences)

Sequence

guggaaauuugauguuggcagagcucaaucaaaucaaagcacucaaugguuggguucuuucaucUGAUUGAGCCGUGCCAAUAUCgcauuaaau
.....(((.(((((((((((..(((((((((.((.((((.((((((...)))))).)))).)).)))))))))..))))))))))).)))....

Structure

gugga   u           ga         a  c    c      u 
     aau ugauguuggca  gcucaauca au aaag acucaa  
     ||| |||||||||||  ||||||||| || |||| |||||| g
     uua gCUAUAACCGU  CGAGUUAGU ua uuuc uggguu  
-uaaa   c           GC         c  c    u      g 

Annotation confidence Not enough data

Genome context

CM000337.2: 31797187-31797280 [-]

Mature ptc-miR171e

• Accession: MIMAT0001987
• Description: Populus trichocarpa ptc-miR171e mature miRNA
• Sequence: 65 - UGAUUGAGCCGUGCCAAUAUC - 85
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203