miRBase entry: 22156213

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

PubMed ID 22156213
Authors "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
Journal "Genes Dev
Volume 25
Pages 2540-2553

There are 232 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
gma-MIR160a MI0001774 None chr10 44431708 44431826 - High
gma-MIR396b MI0001786 None chr13 27517027 27517152 + High
gma-MIR156b MI0001790 None chr14 992155 992274 + High
mtr-MIR169d MI0005578 None chr2 13468364 13468603 + High
mtr-MIR169e MI0005579 None chr2 13473516 13473616 + High
mtr-MIR166c MI0005581 None chr3 33641974 33642078 - High
mtr-MIR398a MI0005599 None chr5 18765673 18765770 - High
mtr-MIR393b MI0005601 None chr5 33945918 33946036 + High
mtr-MIR169g MI0005604 None chr6 3029966 3030176 + High
mtr-MIR166f MI0005614 None chr7 26018024 26018202 - High
mtr-MIR171e MI0005620 None chr4 39704652 39704744 + High
mtr-MIR396a MI0005621 None chr4 39789612 39789704 + High
mtr-MIR169h MI0005623 None chr4 44360866 44360951 - High
mtr-MIR169b MI0005625 None None None High
gma-MIR162a MI0007208 None chr6 20376062 20376163 - High
gma-MIR482a MI0007218 None chr2 7873063 7873157 + High
gma-MIR1508a MI0007220 None chr16 33378856 33378950 + High
gma-MIR1510a MI0007222 None chr16 31887382 31887474 + High
gma-MIR1511 MI0007223 None chr18 20910835 20910933 + High
mtr-MIR1509a MI0010543 None chr7 36253579 36253832 + High
gma-MIR1510b MI0010575 None chr2 6675723 6675816 + High
gma-MIR2109 MI0010579 None chr4 36995886 36995956 - High
gma-MIR1509b MI0010730 None chr5 1350441 1350549 + High
mtr-MIR2597 MI0011834 None chr6 18776013 18776119 - High
mtr-MIR169j MI0011868 None chr2 13454079 13454208 + High
gma-MIR391 MI0016521 None chr13 42292832 42292941 + High
gma-MIR156f MI0016559 None chr2 47699715 47699820 - High
gma-MIR171c MI0016575 None chr7 43625963 43626066 - High
gma-MIR394b MI0016577 None chr14 48784355 48784458 + High
gma-MIR4412 MI0016578 None chr4 37037465 37037552 - High
gma-MIR394a MI0016582 None chr17 41517111 41517267 + High
gma-MIR4415a MI0016584 None chr18 56193529 56193704 + High
gma-MIR166c MI0017829 None chr7 4502830 4502959 - High
gma-MIR166h MI0017834 None chr8 14920990 14921179 + High
gma-MIR171e MI0017839 None chr5 38773113 38773202 - High
gma-MIR171g MI0017841 None chr16 5376139 5376228 - High
gma-MIR398c MI0017847 None chr8 14229061 14229170 - High
gma-MIR408d MI0017848 None chr19 47281670 47281799 - High
gma-MIR2118a MI0017849 None chr20 36443544 36443713 + High
gma-MIR2118b MI0017850 None chr10 49169712 49169821 - High
gma-MIR530a MI0017852 None chr12 33650621 33650770 + High
gma-MIR1507c MI0017854 None chr9 17134380 17134469 - High
gma-MIR1508c MI0017855 None chr9 31140427 31140516 + High
gma-MIR4996 MI0017862 None chr15 5437428 5437617 + High
gma-MIR5038a MI0017913 None chr9 30857860 30858010 + High
gma-MIR169i MI0017918 None chr13 21505359 21505509 + High
mtr-MIR5206a MI0018244 None chr7 23934943 23935068 - High
mtr-MIR5210 MI0018250 None chr3 22394767 22394883 + High
mtr-MIR5213 MI0018253 None chr2 18000286 18000398 + High
mtr-MIR5214 MI0018254 None chr3 1385082 1385180 - Medium
mtr-MIR4414a MI0018312 None chr1 31864157 31864260 - High
mtr-MIR4414b MI0018316 None None None High
mtr-MIR5229b MI0018319 None chr5 11293234 11293322 + High
mtr-MIR5231 MI0018321 None chr7 957949 958053 + -
mtr-MIR5239 MI0018338 None AC225474.24 38945 39055 - Medium
mtr-MIR5250 MI0018351 None chr5 28552485 28552600 - High
mtr-MIR2111l MI0018359 None None None -
mtr-MIR5262 MI0018366 None chr4 37152484 37152568 - Medium
mtr-MIR172b MI0018368 None AC235487.1 197953 198066 + High
mtr-MIR172c MI0018369 None AC233663.2 10169 10307 + High
mtr-MIR159b MI0018370 None AC233577.5 10385 10570 - High
mtr-MIR171h MI0018372 None chr3 31404708 31404816 - High
mtr-MIR168b MI0018373 None chr5 41975236 41975333 + High
mtr-MIR156j MI0018375 None chr1 3468974 3469076 + High
mtr-MIR5264 MI0018376 None chr3 17090360 17090468 - High
gma-MIR5037c MI0018625 None chr8 47698518 47698613 + Medium
gma-MIR5374 MI0018633 None chr5 12748029 12748248 - High
gma-MIR171j MI0018641 None chr2 4065759 4065911 - High
gma-MIR397a MI0018645 None chr8 4644313 4644420 - High
gma-MIR397b MI0018646 None chr13 35595158 35595279 - High
gma-MIR408a MI0018647 None chr2 837414 837546 + High
gma-MIR408b MI0018648 None chr3 42619826 42619957 - High
gma-MIR408c MI0018649 None chr10 37083961 37084086 - High
gma-MIR3522 MI0018650 None chr15 4337688 4337774 + High
gma-MIR162c MI0018659 None chr17 9894786 9894904 + High
gma-MIR166j MI0018661 None chr15 3706979 3707146 - High
gma-MIR169j MI0018662 None chr2 43801693 43801777 - Medium
gma-MIR169l MI0018664 None chr14 5435482 5435595 + High
gma-MIR171k MI0018667 None chr13 27458231 27458328 + High
gma-MIR172i MI0018670 None chr15 2892841 2893001 - High
gma-MIR319h MI0018673 None chr2 42629369 42629554 + High
gma-MIR319j MI0018675 None chr11 1382971 1383149 + High
gma-MIR482d MI0018681 None chr10 49165318 49165412 - High
gma-MIR1512b MI0018682 None chr2 8707970 8708058 - High
gma-MIR4415b MI0018685 None chr8 23061554 23061709 + High
mtr-MIR5556 MI0019081 None chr4 25278547 25278667 - High
mtr-MIR5558 MI0019085 None chr5 19731787 19731872 + High
mtr-MIR5559 MI0019086 None chr6 1058333 1058470 + Medium
mtr-MIR5561 MI0019089 None chr7 33922012 33922100 - High
mtr-MIR167b MI0019092 None chr7 37444819 37445025 + High
mtr-MIR168c MI0019093 None chr5 10278669 10278794 + High
mtr-MIR408 MI0019094 None chr1 22930123 22930247 + High
gma-MIR5667 MI0019261 None chr7 5379134 5379221 - High
gma-MIR5671a MI0019265 None chr11 27953059 27953177 - High
gma-MIR1512c MI0019270 None chr2 8698923 8699026 - High
gma-MIR530b MI0019275 None chr13 41761036 41761186 - High
mtr-MIR5740 MI0019662 None chr1 4699041 4699190 + High
mtr-MIR5741a MI0019663 None chr1 21641192 21641295 + -
mtr-MIR396c MI0019664 None chr1 3016845 3016978 - High
mtr-MIR5742 MI0019665 None chr1 7023238 7023394 - Low
mtr-MIR5743a MI0019666 None chr1 8428934 8429014 - -
mtr-MIR5743b MI0019667 None chr1 8438755 8438835 - -
mtr-MIR5741b MI0019668 None chr2 5612749 5612877 + -
mtr-MIR5744 MI0019669 None chr2 16613641 16613887 + Low
mtr-MIR5745a MI0019670 None chr2 1577188 1577304 - High
mtr-MIR5746 MI0019671 None chr2 2646630 2646708 - Medium
mtr-MIR5747 MI0019672 None chr2 17005983 17006094 - High
mtr-MIR5748 MI0019673 None chr3 3472490 3472591 + -
mtr-MIR5749 MI0019674 None chr3 18828630 18828888 + High
mtr-MIR5750 MI0019675 None chr3 7917931 7918187 - Low
mtr-MIR5751 MI0019676 None chr3 10919715 10919944 - Low
mtr-MIR171g MI0019677 None None None High
mtr-MIR5752a MI0019678 None chr4 818809 818927 - High
mtr-MIR5752b MI0019679 None chr4 896841 896959 - High
mtr-MIR5753 MI0019680 None chr4 4555782 4555885 - Medium
mtr-MIR5754 MI0019681 None chr4 24463751 24463874 - High
mtr-MIR5755 MI0019682 None chr4 24877189 24877382 - -
mtr-MIR5741c MI0019684 None chr5 13211983 13212149 + Low
mtr-MIR5756 MI0019685 None chr5 28805419 28805502 + High
mtr-MIR5757 MI0019686 None chr5 31242698 31242804 + Medium
mtr-MIR5225b MI0019687 None chr6 2359911 2360009 + -
mtr-MIR5225c MI0019688 None chr6 2545198 2545296 + -
mtr-MIR5758 MI0019689 None chr6 22625525 22625717 + High
mtr-MIR5745b MI0019690 None chr7 26377742 26377870 + High
mtr-MIR5759 MI0019691 None chr7 27924451 27924615 + -
mtr-MIR5741d MI0019692 None chr7 30592843 30593076 + Low
mtr-MIR2593e MI0019693 None chr7 3414785 3414874 - Low
mtr-MIR5760 MI0019694 None chr7 15223866 15223941 - Medium
mtr-MIR5037a MI0019695 None chr7 23948126 23948212 - High
mtr-MIR5037b MI0019696 None chr7 23954301 23954389 - High
mtr-MIR5206b MI0019697 None chr7 23959036 23959156 - High
mtr-MIR5037c MI0019698 None chr7 23961112 23961230 - High
mtr-MIR2593d MI0019699 None chr8 8822043 8822132 - Low
mtr-MIR5741e MI0019700 None chr8 23422397 23422643 - Low
mtr-MIR530 MI0019701 None AC235487.1 38438 38596 - High
gma-MIR5761a MI0019702 None chr10 51252115 51252310 - Low
gma-MIR5762 MI0019703 None chr12 653862 653999 + High
gma-MIR5763a MI0019704 None chr13 36443341 36443441 - High
gma-MIR5763b MI0019705 None None None High
gma-MIR5764 MI0019706 None chr14 33216347 33216493 + Low
gma-MIR5765 MI0019707 None chr15 31455959 31456041 - -
gma-MIR5766 MI0019708 None chr16 2063448 2063687 - -
gma-MIR5767 MI0019709 None chr16 30784546 30784656 - Low
gma-MIR5768 MI0019710 None chr17 8459044 8459129 - Low
gma-MIR5769 MI0019711 None chr18 7386834 7387003 + -
gma-MIR5770a MI0019712 None chr18 46351571 46351817 - High
gma-MIR5559 MI0019713 None chr19 776239 776380 + Low
gma-MIR5225 MI0019714 None chr19 1966719 1966831 + High
gma-MIR393b MI0019715 None chr1 42280842 42280957 - High
gma-MIR5771 MI0019716 None chr2 38012669 38012749 + Low
gma-MIR4416c MI0019717 None chr2 27334573 27334768 - High
gma-MIR5761b MI0019718 None chr3 3831731 3831830 + -
gma-MIR5772 MI0019719 None chr3 19529805 19529922 - Low
gma-MIR5773 MI0019720 None chr3 44861560 44861732 + Medium
gma-MIR5774a MI0019721 None chr4 11410437 11410586 + Low
gma-MIR4416b MI0019722 None chr3 36067834 36067977 - High
gma-MIR1516c MI0019723 None chr4 40141067 40141189 + Medium
gma-MIR5775 MI0019724 None chr4 9837427 9837557 - -
gma-MIR5776 MI0019726 None chr5 3506706 3506943 - High
gma-MIR5777 MI0019727 None chr5 4583480 4583724 - Low
gma-MIR5778 MI0019728 None chr6 47797818 47797940 + Low
gma-MIR5779 MI0019729 None chr6 12762118 12762316 - Medium
gma-MIR5780a MI0019730 None chr6 29583605 29583732 - Low
gma-MIR5781 MI0019731 None chr6 36774683 36774764 - Medium
gma-MIR5782 MI0019732 None chr7 12611603 12611743 - Low
gma-MIR5783 MI0019733 None chr7 41030514 41030597 + Medium
gma-MIR5770b MI0019734 None chr7 16812503 16812763 - High
gma-MIR5784 MI0019735 None chr8 30764439 30764548 + High
gma-MIR5785 MI0019736 None chr8 45205542 45205683 - Low
gma-MIR5763c MI0019737 None None None -
gma-MIR5774b MI0019738 None chr9 49753426 49753582 - Medium
gma-MIR399a MI0019739 None chr10 46844955 46845048 + High
gma-MIR828a MI0019740 None chr11 9052348 9052460 + High
gma-MIR156p MI0019741 None chr11 462200 462299 - Medium
gma-MIR530c MI0019742 None chr11 26804548 26804754 - High
gma-MIR828b MI0019743 None chr12 3219162 3219271 + High
gma-MIR530d MI0019744 None chr12 6225432 6225643 + High
gma-MIR171m MI0019745 None chr12 8432426 8432558 + High
gma-MIR172k MI0019746 None chr12 33517484 33517617 + High
gma-MIR171n MI0019747 None chr12 35463985 35464118 + High
gma-MIR156q MI0019748 None chr13 22074983 22075087 + High
gma-MIR171o MI0019749 None chr13 31863180 31863281 + High
gma-MIR172l MI0019750 None chr13 43075243 43075420 + High
gma-MIR169o MI0019751 None chr13 21496986 21497084 + -
gma-MIR319n MI0019752 None chr13 28262485 28262580 - High
gma-MIR171p MI0019753 None chr13 40504444 40504575 - High
gma-MIR530e MI0019754 None chr13 41764574 41764770 - High
gma-MIR394d MI0019755 None chr15 3785393 3785475 + High
gma-MIR169p MI0019756 None chr15 14192081 14192178 + High
gma-MIR156r MI0019757 None chr16 6633951 6634116 + -
gma-MIR399b MI0019758 None chr16 36115809 36115909 + High
gma-MIR396j MI0019759 None chr16 31530670 31530803 - High
gma-MIR171q MI0019760 None chr17 1001169 1001277 + High
gma-MIR156s MI0019761 None chr17 4021217 4021350 - High
gma-MIR169r MI0019762 None chr17 4587059 4587161 - High
gma-MIR169s MI0019763 None chr17 4594138 4594257 - High
gma-MIR396k MI0019764 None None None High
gma-MIR2111b MI0019765 None chr18 45662001 45662084 - High
gma-MIR2111c MI0019766 None chr18 45690335 45690493 - High
gma-MIR5786 MI0019767 None chr19 1947621 1947760 + High
gma-MIR166k MI0019768 None chr19 36827774 36827945 - High
gma-MIR2111d MI0019769 None None None High
gma-MIR156t MI0019770 None chr1 56198440 56198539 + High
gma-MIR2606a MI0019771 None chr20 34012454 34012637 + Low
gma-MIR482e MI0019772 None None None High
gma-MIR399c MI0019773 None chr20 39360463 39360556 - High
gma-MIR171r MI0019774 None chr4 50116148 50116249 + High
gma-MIR394e MI0019775 None chr5 36014286 36014396 + High
gma-MIR399d MI0019776 None chr5 35229349 35229451 - High
gma-MIR399e MI0019777 None chr5 35238378 35238516 - High
gma-MIR169t MI0019778 None chr5 38544108 38544233 + High
gma-MIR171s MI0019779 None chr6 10887673 10887774 - High
gma-MIR166l MI0019780 None chr6 45680685 45680863 - High
gma-MIR171t MI0019781 None chr6 49564865 49564981 - High
gma-MIR2111e MI0019782 None chr7 16470310 16470397 - High
gma-MIR2111f MI0019783 None chr7 16494867 16494949 - High
gma-MIR394f MI0019784 None chr8 9871233 9871316 + High
gma-MIR171u MI0019785 None chr8 923816 923917 - High
gma-MIR399f MI0019786 None chr8 9110335 9110442 - High
gma-MIR399g MI0019787 None chr8 9118325 9118459 - High
gma-MIR395d MI0019788 None chr8 41415505 41415625 - High
gma-MIR395e MI0019789 None chr8 41424558 41424674 - High
gma-MIR395f MI0019790 None chr8 41439069 41439190 - High
gma-MIR395g MI0019791 None chr8 41445444 41445571 - High
gma-MIR166m MI0019792 None chr9 36469526 36469701 + High
gma-MIR5674b MI0019793 None chr9 40101457 40101661 + -
gma-MIR169u MI0019794 None chr9 45847295 45847435 - High
gma-MIR2606b MI0019795 None KQ474241.1 6816 6998 - Medium
gma-MIR399h MI0019796 None chr9 36742439 36742552 + High
mtr-MIR169i MI0025203 None None None High
mtr-MIR169r MI0019683 None None None Low
gma-MIR1513d MI0019725 None None None Low



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