Stem-loop mtr-MIR5231

Accession

MI0018321

Description

Medicago truncatula mtr-MIR5231 precursor miRNA

Sequence

6379 reads, 52.0 reads per million, 111 experiments

uuagaggugcUUAUGCAAGUAGAUAAGCUCAaauaagccaaaucaaagaggagcuuguuuggauuuacuuauuugAGCUUAUGUAUUGGCAUAAGAacuuugcaa
...(((((.(((((((.((((.((((((((((((((((((((.(((........)))))))).....))))))))))))))).)))).))))))).)))))....

Structure

-uua     g       A    G               -----     u   aga 
    gaggu cUUAUGC AGUA AUAAGCUCAaauaag     ccaaa caa   g
    ||||| ||||||| |||| |||||||||||||||     ||||| |||    
    uuuca GAAUACG UUAU UAUUCGAguuuauuc     gguuu guu   g
aacg     A       G    G               auuua     -   cga 

Annotation confidence Not enough data

Genome context

chr7: 957949-958053 [+]

Mature mtr-miR5231-5p

• Accession: MIMAT0021216
• Description: Medicago truncatula mtr-miR5231-5p mature miRNA
• Sequence: 11 - UUAUGCAAGUAGAUAAGCUCA - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5231-3p

• Accession: MIMAT0055092
• Description: Medicago truncatula mtr-miR5231-3p mature miRNA
• Sequence: 76 - AGCUUAUGUAUUGGCAUAAGA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553