Stem-loop gma-MIR1512b

Accession

MI0018682

Description

Glycine max gma-MIR1512b precursor miRNA

Literature search

12 open access papers mention gma-MIR1512b
(29 sentences)

Sequence

41273 reads, 270.0 reads per million, 159 experiments

uugauaccUAACUGGAAAUUCUUAAAGCAUucccaucaucaaaaugaugugaaaauuaggaaUGCUUUAAGAAUUUCAGUUAUgcauca
.((((.(.((((((.((((((((((((((((((((((((....)))))).........)))))))))))))))))))))))).).))))

Structure

u    a c      G                  ---------      c 
 ugau c UAACUG AAAUUCUUAAAGCAUucc         caucau a
 |||| | |||||| ||||||||||||||||||         ||||||  
 acua g AUUGAC UUUAAGAAUUUCGUaagg         guagua a
-    c U      -                  auuaaaagu      a 

Annotation confidence High

Genome context

chr2: 8707970-8708058 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR1512b

Mature gma-miR1512b-5p

• Accession: MIMAT0021673
• Description: Glycine max gma-miR1512b-5p mature miRNA
• Sequence: 9 - UAACUGGAAAUUCUUAAAGCAU - 30
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR1512b-3p

• Accession: MIMAT0054261
• Description: Glycine max gma-miR1512b-3p mature miRNA
• Sequence: 63 - UGCUUUAAGAAUUUCAGUUAU - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553