Stem-loop gma-MIR171n

Accession

MI0019747

Description

Glycine max gma-MIR171n precursor miRNA

Literature search

16 open access papers mention gma-MIR171n
(37 sentences)

Sequence

84308 reads, 522.0 reads per million, 176 experiments

auacgaauuagcacaugacaaauuaAGGUAUUGGCGUGCCUCAAUUugaauacauggcuauuaugacaaauccagccuuguaguuugaUUGAGCCGCGUCAAUAUCUUAuuuugcucuucuuuuccaucuccua
................((((((.(((((((((((((((.(((((((....((((.((((..............)))).))))....))))))).))))))))))))))).)))).)).................

Structure

-auacgaauuagcacau  -    u               C       ugaa    u    auuaug 
                 ga caaa uaAGGUAUUGGCGUG CUCAAUU    uaca ggcu      a
                 || |||| ||||||||||||||| |||||||    |||| ||||       
                 cu guuu AUUCUAUAACUGCGC GAGUUag    augu ccga      c
auccucuaccuuuucuu  c    u               C       uuug    u    ccuaaa 

Annotation confidence High

Genome context

chr12: 35463985-35464118 [+]

Mature gma-miR171n-5p

• Accession: MIMAT0054319
• Description: Glycine max gma-miR171n-5p mature miRNA
• Sequence: 26 - AGGUAUUGGCGUGCCUCAAUU - 46
• Evidence: experimental ; unknown

Mature gma-miR171n-3p

• Accession: MIMAT0023202
• Description: Glycine max gma-miR171n-3p mature miRNA
• Sequence: 89 - UUGAGCCGCGUCAAUAUCUUA - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553