Stem-loop mtr-MIR5747

Accession

MI0019672

Description

Medicago truncatula mtr-MIR5747 precursor miRNA

Sequence

21803 reads, 165.0 reads per million, 111 experiments

aacaauuaccAAAAGAAUACUCAUACAUAACAUUuuucacacgucgacauaacaugauguugugucgacaugugagaaaUGUUAUGUAUGUGUAUUCUUUUGGuaauuguuu
((((((((((((((((((((.((((((((((((((((((((.((((((((((((...)))))))))))).)))))))))))))))))))).)))))))))))))))))))).

Structure

-                    U                    c            u 
 aacaauuaccAAAAGAAUAC CAUACAUAACAUUuuucaca gucgacauaaca  
 |||||||||||||||||||| |||||||||||||||||||| |||||||||||| g
 uuguuaauGGUUUUCUUAUG GUAUGUAUUGUaaagagugu cagcuguguugu  
u                    U                    a            a 

Annotation confidence High

Genome context

chr2: 17005983-17006094 [-]

Mature mtr-miR5747-5p

• Accession: MIMAT0023127
• Description: Medicago truncatula mtr-miR5747-5p mature miRNA
• Sequence: 11 - AAAAGAAUACUCAUACAUAACAUU - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5747-3p

• Accession: MIMAT0055242
• Description: Medicago truncatula mtr-miR5747-3p mature miRNA
• Sequence: 80 - UGUUAUGUAUGUGUAUUCUUUUGG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553