Stem-loop gma-MIR5766

Accession

MI0019708

Description

Glycine max gma-MIR5766 precursor miRNA

Sequence

uguuccuuuucuugcuucuacucacccccaugaccauuaguuuauacuuaguccaaguuguacuuuauuuugcuguggaagaagaauaagaccaagguuuuaauuagagccucguuugugcaagugaaaaauaggaucacauugaccuauucuuuuuucaagcucuuuuaauugucuugggaagaaaaugaacccagaaaugaauggggUUGAGGCUGAGAAGAGGCAAGagaauggaca
(((((.(((((((((((((.((((...((.(((((....((((((......((((((..............(((.(((((((((((((((((..(((((((....))))))).))))((.(((((((.........)))).))))).))))))))))))))))............))))))......))))))(((........)))))))).)).)))).))))))))))))).)))))

Structure

     c             a    ccc  a     ----------auua      acuuag      uuguacuuuauuuu   g             ------------------------------    ca       a 
uguuc uuuucuugcuucu cuca   cc ugacc              guuuau      uccaag              gcu uggaagaagaaua                              agac  agguuuu a
||||| ||||||||||||| ||||   || |||||              ||||||      ||||||              ||| |||||||||||||                              ||||  |||||||  
acagg aagaGAACGGAGA GAGU   GG GUUgg              caagua      ggguuc              cga acuuuuuucuuau                              uuug  uccgaga u
     u             A    --C  A     gguaaguaaagacc      aaagaa      --uguuaauuuucu   -             ccaguuacacuaggauaaaaagugaacgug    -c       u 

Annotation confidence Not enough data

Genome context

chr16: 2063448-2063687 [-]

Mature gma-miR5766

• Accession: MIMAT0023163
• Description: Glycine max gma-miR5766 mature miRNA
• Sequence: 210 - UUGAGGCUGAGAAGAGGCAAG - 230
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553