Stem-loop gma-MIR395e

Accession

MI0019789

Description

Glycine max gma-MIR395e precursor miRNA

Literature search

15 open access papers mention gma-MIR395e
(68 sentences)

Sequence

72574 reads, 209.0 reads per million, 166 experiments

gcugucucuuggAGUUCCUCUGAGCACUUCACGaaugaccuaguucuauuugguauuacccuuuagauagaauagucuuauauaagUGAAGUGUUUGGGGGAACUUUuggguacaac
..((((((..((((((((((((((((((((((....(((...(((((((((((.........))))))))))).)))........)))))))))))))))))))))).))).)))..

Structure

gc   -   uu                      ----Gaau   cua           uau 
  ugu cuc  ggAGUUCCUCUGAGCACUUCAC        gac   guucuauuugg   u
  ||| |||  ||||||||||||||||||||||        |||   |||||||||||   a
  aca ggg  UUUCAAGGGGGUUUGUGAAGUg        cug   uaagauagauu   c
ca   u   -u                      aauauauu   --a           ucc 

Annotation confidence High

Genome context

chr8: 41424558-41424674 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR395e

Mature gma-miR395e-5p

• Accession: MIMAT0054356
• Description: Glycine max gma-miR395e-5p mature miRNA
• Sequence: 13 - AGUUCCUCUGAGCACUUCACG - 33
• Evidence: experimental ; unknown

Mature gma-miR395e-3p

• Accession: MIMAT0023244
• Description: Glycine max gma-miR395e-3p mature miRNA
• Sequence: 87 - UGAAGUGUUUGGGGGAACUUU - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553