Stem-loop gma-MIR395g

Accession

MI0019791

Description

Glycine max gma-MIR395g precursor miRNA

Literature search

15 open access papers mention gma-MIR395g
(68 sentences)

Sequence

89592 reads, 242.0 reads per million, 173 experiments

gguugucucuuggAGUUCCUCUGAACACUUCACACgugggacuagaguagugguauuguauccuuuagaucauagaauaguccucaucaucaccaagUGAAGUGUUUGGGGGAACUUUuagguacaac
.(((((.(((.((((((((((((((((((((((..(((((((((.....(((((.(((.......))))))))....)))))).......)))...)))))))))))))))))))))).))).)))))

Structure

g     c   u                      -AC   -------      gagua     a   ua 
 guugu ucu ggAGUUCCUCUGAACACUUCAC   gug       ggacua     guggu uug  u
 ||||| ||| ||||||||||||||||||||||   |||       ||||||     ||||| |||  c
 caaca gga UUUCAAGGGGGUUUGUGAAGUg   cac       ccugau     uacua gau  c
-     u   u                      aac   uacuacu      -aaga     -   uu 

Annotation confidence High

Genome context

chr8: 41445444-41445571 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR395g

Mature gma-miR395g-5p

• Accession: MIMAT0054358
• Description: Glycine max gma-miR395g-5p mature miRNA
• Sequence: 14 - AGUUCCUCUGAACACUUCACAC - 35
• Evidence: experimental ; unknown

Mature gma-miR395g-3p

• Accession: MIMAT0023246
• Description: Glycine max gma-miR395g-3p mature miRNA
• Sequence: 98 - UGAAGUGUUUGGGGGAACUUU - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553