Stem-loop mtr-MIR5250

Accession

MI0018351

Description

Medicago truncatula mtr-MIR5250 precursor miRNA

Sequence

123571 reads, 1062.0 reads per million, 111 experiments

ucuugaagcaggcUCUUCAUCUAACAUUCUGGAACacuuuuaaucucuaaauuguuuaaauugcauuugagguuuaagguguuUGAGAAUGUUAGAUACGGAACcagcuuacaauu
..(((((((.((.(((..((((((((((((.(((((((((.((((((.((((.((.......)))))))))))).))))))))).))))))))))))..))).)).)))).)))..

Structure

uc   -    a  c   UC            G         u      u    u  uu 
  uug aagc gg UCU  AUCUAACAUUCU GAACacuuu aaucuc aaau gu  a
  ||| |||| || |||  |||||||||||| ||||||||| |||||| |||| ||  a
  aac uucg cC AGG  UAGAUUGUAAGA Uuuguggaa uuggag uuua cg  a
uu   a    a  A   CA            G         u      -    -  uu 

Annotation confidence High

Genome context

chr5: 28552485-28552600 [-]

Mature mtr-miR5250-5p

• Accession: MIMAT0055120
• Description: Medicago truncatula mtr-miR5250-5p mature miRNA
• Sequence: 14 - UCUUCAUCUAACAUUCUGGAAC - 35
• Evidence: experimental ; unknown

Mature mtr-miR5250-3p

• Accession: MIMAT0021246
• Description: Medicago truncatula mtr-miR5250-3p mature miRNA
• Sequence: 84 - UGAGAAUGUUAGAUACGGAAC - 104
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553