Stem-loop mtr-MIR171h

Accession

MI0018372

Description

Medicago truncatula mtr-MIR171h precursor miRNA

Literature search

10 open access papers mention mtr-MIR171h
(199 sentences)

Sequence

41719 reads, 801.0 reads per million, 111 experiments

aaguagacaggaGUGGUGUUGUUUCUGCUCAUCuuauuaaauaaugaaugaaugaaugacauuugcuuacuuauaagaCGAGCCGAAUCAAUAUCACUCcaguacaccu
..((..((.((((((((((((.(((.((((.((((((........(((((.........)))))........)))))).)))).))).)))))))))))).))..))..

Structure

aa  ag  a            U   U    A      uaaauaau     aau 
  gu  ac ggaGUGGUGUUG UUC GCUC UCuuau        gaaug   g
  ||  || |||||||||||| ||| |||| ||||||        |||||   a
  ca  ug cCUCACUAUAAC AAG CGAG agaaua        uuuac   a
uc  ca  a            U   C    C      uucauucg     agu 

Annotation confidence High

Genome context

chr3: 31404708-31404816 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR171h

Mature mtr-miR171h-5p

• Accession: MIMAT0055135
• Description: Medicago truncatula mtr-miR171h-5p mature miRNA
• Sequence: 13 - GUGGUGUUGUUUCUGCUCAUC - 33
• Evidence: experimental ; unknown

Mature mtr-miR171h-3p

• Accession: MIMAT0021269
• Description: Medicago truncatula mtr-miR171h-3p mature miRNA
• Sequence: 79 - CGAGCCGAAUCAAUAUCACUC - 99
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553