Stem-loop mtr-MIR5746

Accession

MI0019671

Description

Medicago truncatula mtr-MIR5746 precursor miRNA

Sequence

1455 reads, 10.0 reads per million, 110 experiments

caAGGUUGGUUUAGUUGAUAAAGAGUuaacucacuuguaagguugUGGAUUCAACUCUAAGUGUCGGUUgaaaaccuuu
.((((((..(((((((((((.((((((((.((((..........)))).)).))))))...))))))))))))))))).

Structure

c      GG           --A      -  c    uugu 
 aAGGUU  UUUAGUUGAUA   AGAGUu aa ucac    a
 ||||||  |||||||||||   |||||| || ||||     
 uuccaa  aagUUGGCUGU   UCUCAA UU GGUg    a
u      --           GAA      C  A    uugg 

Annotation confidence Medium

Genome context

chr2: 2646630-2646708 [-]

Mature mtr-miR5746-5p

• Accession: MIMAT0055241
• Description: Medicago truncatula mtr-miR5746-5p mature miRNA
• Sequence: 3 - AGGUUGGUUUAGUUGAUAAAGAGU - 26
• Evidence: experimental ; unknown

Mature mtr-miR5746-3p

• Accession: MIMAT0023126
• Description: Medicago truncatula mtr-miR5746-3p mature miRNA
• Sequence: 46 - UGGAUUCAACUCUAAGUGUCGGUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553