Stem-loop mtr-MIR5745a

Accession

MI0019670

Description

Medicago truncatula mtr-MIR5745a precursor miRNA

Sequence

5579 reads, 59.0 reads per million, 111 experiments

uauuuuacacaugCAUCCAAUGAUGUGUUUCCACAUCAuuugaucaauaugacaacucguguguuuucauauuuauuaauugaCGUGACAACACAUCAUUGGAUGCAuguguaaaau
.((((((((((((((((((((((((((((..(((.(((.(((((.(((((((.(((......))).))))))).))))).))).)))..))))))))))))))))))))))))))))

Structure

u                            UC   A   u     c       c   uc 
 auuuuacacaugCAUCCAAUGAUGUGUU  CAC UCA uugau aauauga aac  g
 ||||||||||||||||||||||||||||  ||| ||| ||||| ||||||| |||   
 uaaaauguguACGUAGGUUACUACACAA  GUG agu aauua uuauacu uug  u
-                            CA   C   u     u       u   ug 

Annotation confidence High

Genome context

chr2: 1577188-1577304 [-]

Mature mtr-miR5745a-5p

• Accession: MIMAT0055240
• Description: Medicago truncatula mtr-miR5745a-5p mature miRNA
• Sequence: 14 - CAUCCAAUGAUGUGUUUCCACAUCA - 38
• Evidence: experimental ; unknown

Mature mtr-miR5745a-3p

• Accession: MIMAT0023125
• Description: Medicago truncatula mtr-miR5745a-3p mature miRNA
• Sequence: 84 - CGUGACAACACAUCAUUGGAUGCA - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553