Stem-loop mtr-MIR5206a

Accession

MI0018244

Description

Medicago truncatula mtr-MIR5206a precursor miRNA

Sequence

17314 reads, 235.0 reads per million, 104 experiments

aaggccuucaguAACCCUCAAAGGCUUCCAUGgaaucauagcauggcuuacggucagauuaaucauauauuugacuauagugaugugaaaaucAUGGGAUCCUGUUGGUGGGUUACugaaagcuuu
(((((.((((((((((((((((((.((((((((.......((((.(((...((((((((.........))))))))..))).)))).....)))))))).))).)))).))))))))))).)))))

Structure

     c           -    -   C        aaucaua    g   uac        uaa 
aaggc uucaguAACCC UCAA AGG UUCCAUGg       gcau gcu   ggucagau   u
||||| ||||||||||| |||| ||| ||||||||       |||| |||   ||||||||   c
uuucg aaguCAUUGGG GGUU UCC AGGGUAcu       ugua uga   ucaguuua   a
     a           U    G   U        --aaaag    g   -ua        uau 

Annotation confidence High

Genome context

chr7: 23934943-23935068 [-]

Mature mtr-miR5206a-5p

• Accession: MIMAT0055025
• Description: Medicago truncatula mtr-miR5206a-5p mature miRNA
• Sequence: 13 - AACCCUCAAAGGCUUCCAUG - 32
• Evidence: experimental ; unknown

Mature mtr-miR5206a-3p

• Accession: MIMAT0021137
• Description: Medicago truncatula mtr-miR5206a-3p mature miRNA
• Sequence: 94 - AUGGGAUCCUGUUGGUGGGUUAC - 116
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553