Stem-loop gma-MIR394d

Accession

MI0019755

Description

Glycine max gma-MIR394d precursor miRNA

Literature search

8 open access papers mention gma-MIR394d
(12 sentences)

Sequence

177721 reads, 387.0 reads per million, 175 experiments

cauagacauuUUGGCAUUCUGUCCACCUCCauuggugaugauggccauuuggAGGUGGCCAGUAUGCCAAACGggcucugugu
(((((((..((((((((.(((.(((((((((.((((.......))))..))))))))).))).))))))))...).)))))).

Structure

-      - -au        U   U         -u    ga 
 cauaga c   uUUGGCAU CUG CCACCUCCa  uggu  u
 |||||| |   |||||||| ||| |||||||||  ||||  g
 gugucu g   AAACCGUA GAC GGUGGAggu  accg  a
u      c gGC        U   C         uu    gu 

Annotation confidence High

Genome context

chr15: 3785393-3785475 [+]

Mature gma-miR394d-5p

• Accession: MIMAT0023210
• Description: Glycine max gma-miR394d-5p mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCC - 30
• Evidence: experimental ; Illumina [1]

Mature gma-miR394d-3p

• Accession: MIMAT0054325
• Description: Glycine max gma-miR394d-3p mature miRNA
• Sequence: 53 - AGGUGGCCAGUAUGCCAAACG - 73
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553