Stem-loop gma-MIR171k

Accession

MI0018667

Description

Glycine max gma-MIR171k precursor miRNA

Literature search

15 open access papers mention gma-MIR171k
(40 sentences)

Sequence

45284 reads, 191.0 reads per million, 172 experiments

gagaaagCGAUGUUGGUGAGGUUCAAUCCgaagacggauuuacauguagaagcaguaaaauacgaucucagaUUGAGCCGCGCCAAUAUCACUUuauc
...((((.((((((((((.(((((((((.((.((((..(((((.(((....))))))))...)).)))).))))))))).)))))))))).))))...

Structure

gag    C          A         C  a  -  -ga     a   a 
   aaag GAUGUUGGUG GGUUCAAUC ga ga cg   uuuac ugu g
   |||| |||||||||| ||||||||| || || ||   ||||| |||  
   uUUC CUAUAACCGC CCGAGUUag cu cu gc   aaaug acg a
cua    A          G         a  -  a  aua     -   a 

Annotation confidence High

Genome context

chr13: 27458231-27458328 [+]

Mature gma-miR171k-5p

• Accession: MIMAT0021655
• Description: Glycine max gma-miR171k-5p mature miRNA
• Sequence: 8 - CGAUGUUGGUGAGGUUCAAUCC - 29
• Evidence: experimental ; Illumina [1]

Mature gma-miR171k-3p

• Accession: MIMAT0022995
• Description: Glycine max gma-miR171k-3p mature miRNA
• Sequence: 73 - UUGAGCCGCGCCAAUAUCACUU - 94
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553