miRBase entry: gma-MIR169t

Stem-loop gma-MIR169t


Accession
MI0019778
Description
Glycine max gma-MIR169t precursor miRNA

Literature search
24 open access papers mention gma-MIR169t
(100 sentences)

Sequence

ucaugucuggUAGCCAAGGAUGGACUUGCCUAacuauuccauucuacgggacuuuauuuaauuaauuugucucauaugaagacccuuguuugguaaauuggcaagcuuccucggcuauuugcaugc
.(((((..(((((((.((((.((.((((((........(((..(...(((.((((((..................)))))).)))..)..)))......)))))))))))).))))))).))))).

Structure
u     cu       A    U  A      UAacuauu   uu uac   a      uuaauuaa 
 caugu  ggUAGCC AGGA GG CUUGCC        cca  c   ggg cuuuau        u
 |||||  ||||||| |||| || ||||||        |||  |   ||| ||||||         
 guacg  uuaucgg uccu uc gaacgg        ggu  g   ccc gaagua        u
c     -u       c    -  -      --uuaaau   uu -uu   a      uacucugu 


Annotation confidence Not enough data
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Genome context
chr5: 38544108-38544233 [+]

Database links

Mature gma-miR169t

Accession MIMAT0023233
Description Glycine max gma-miR169t mature miRNA
Sequence 11 - UAGCCAAGGAUGGACUUGCCUA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553