Stem-loop mtr-MIR5750

Accession

MI0019675

Description

Medicago truncatula mtr-MIR5750 precursor miRNA

Sequence

gugugagaaaAAGAGAGAUAGAUCAGAAUUGACAauguacauaagcaacaaacacaaguauuuauggcccaaaaaucaaaguuaauauugugcauaaacaucaauauuuaauagggguguacuuuuacuaguuaguguaucccuauuaaauauggauguguaugcauaacguuagcauugauuuuuggacuauauauacauguguuuguugcuuauguacaacuucaauuuugaucuaucucucuuucucuaauacu
((((.(((.(((((((((((((((((((((((...(((((((((((((((((((((.((((.(((((.(((((((((((.((((((.(((((((((.(((((.((((((((((((((((((((..........)))))))))))))))))))).))))).))))))))).)))))).))))))))))).))))).)))).)))))))))))))))))))))...))))))))))))))))))))))).))).)))).

Structure

-    g   a                       CAa                     a    u     c           a      a         a     a                    uuua 
 gugu aga aAAGAGAGAUAGAUCAGAAUUGA   uguacauaagcaacaaacaca guau uaugg ccaaaaaucaa guuaau uugugcaua acauc auauuuaauagggguguacu    c
 |||| ||| |||||||||||||||||||||||   ||||||||||||||||||||| |||| ||||| ||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||     
 caua ucu uuucucucuaucuaguuuuaacu   acauguauucguuguuugugu caua auauc gguuuuuaguu cgauug aauacguau uguag uauaaauuaucccuauguga    u
u    a   c                       uca                     a    u     a           a      c         g     g                    uuga 

Annotation confidence Not enough data

Genome context

chr3: 7917931-7918187 [-]

Mature mtr-miR5750

• Accession: MIMAT0023130
• Description: Medicago truncatula mtr-miR5750 mature miRNA
• Sequence: 11 - AAGAGAGAUAGAUCAGAAUUGACA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553