Stem-loop mtr-MIR172c

Accession

MI0018369

Description

Medicago truncatula mtr-MIR172c precursor miRNA

Literature search

8 open access papers mention mtr-MIR172c
(35 sentences)

Sequence

322520 reads, 3478.0 reads per million, 111 experiments

uauuugcagaugUAGCAUCAUCAAGAUUCACAUaugaaagugcaaaugguuuuguuggauuuugaucugaucgaugcaaaucuaaguucuccauaggucuuuugaacugAGAAUCUUGAUGAUGCUGCAUCagccauaa
.....((.(((((((((((((((((((((.((...(((((.((..((((.....((((((((..(((.....)))..)))))))).....))))..)))))))....)).))))))))))))))))))))).)).....

Structure

uauuu  a                     A  -Uau     u  aa    uuuug        ug   u 
     gc gaugUAGCAUCAUCAAGAUUC CA    gaaag gc  augg     uuggauuu  auc g
     || ||||||||||||||||||||| ||    ||||| ||  ||||     ||||||||  ||| a
     cg CUACGUCGUAGUAGUUCUAAG gu    uuuuc ug  uacc     aaucuaaa  uag u
aauac  a                     A  caag     -  ga    ucuug        cg   c 

Annotation confidence High

Genome context

AC233663.2: 10169-10307 [+]

Mature mtr-miR172c-5p

• Accession: MIMAT0021265
• Description: Medicago truncatula mtr-miR172c-5p mature miRNA
• Sequence: 13 - UAGCAUCAUCAAGAUUCACAU - 33
• Evidence: experimental ; Illumina [2]

Mature mtr-miR172c-3p

• Accession: MIMAT0021266
• Description: Medicago truncatula mtr-miR172c-3p mature miRNA
• Sequence: 110 - AGAAUCUUGAUGAUGCUGCAUC - 131
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553