Stem-loop mtr-MIR5742

Accession

MI0019665

Description

Medicago truncatula mtr-MIR5742 precursor miRNA

Sequence

1599 reads, 14.0 reads per million, 111 experiments

aacgcaguuaCCACAUCAAUGGUCGUUGGAUcgagauaaaacggucuagauuucgauacaaauuuugauuuuuuuuuaagaaaaaaaacuaaaauaucaguuugaaauuucgaucaUCCGAUCCCGAUCCAACGGUCAAuguugugaugacugcuug
...(((((((.((((.((.((((((((((((((.(((.....((((.(((((((((.....((((((.((((((((....)))))))).))))))......))))))))).)))).....))).)))))))))))))).)).)))).)))))))...

Structure

aac       C    U  A              a   aaaac    u         -uacaa      a        u 
   gcaguua CACA CA UGGUCGUUGGAUcg gau     gguc agauuucga      auuuug uuuuuuuu a
   ||||||| |||| || |||||||||||||| |||     |||| |||||||||      |||||| ||||||||  
   cgucagu gugu gu ACUGGCAACCUAGC CUA     cuag uuuaaaguu      uaaaau aaaaaaaa a
guu       a    u  A              C   GCCUa    c         ugacua      c        g 

Annotation confidence Low

Genome context

chr1: 7023238-7023394 [-]

Mature mtr-miR5742-5p

• Accession: MIMAT0023120
• Description: Medicago truncatula mtr-miR5742-5p mature miRNA
• Sequence: 11 - CCACAUCAAUGGUCGUUGGAU - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5742-3p

• Accession: MIMAT0055238
• Description: Medicago truncatula mtr-miR5742-3p mature miRNA
• Sequence: 117 - UCCGAUCCCGAUCCAACGGUCAA - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553